rs46067559 SNP Detail

Summary

• ID
  rs46067559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130538785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAGGAAC TAAGCTTGGG TCCTCTGAGA GATCAGAAAG
  TGCTCTCCCG ACTCATATAT CTTGTTACAC AGCTACTTAA ATGAAGACAT CAAGTCCACA
  K
  AATCCTAACA TTTCTTTTTT TGATGCTGGT GCTTGGTGCT TGGGTGGTTC AAACCCACAG
  CCTTGAGCAT GCTAGGCACC ATTGTGGTAT TGTACAAACA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60841585	NES16009655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46067559					SNP	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60841585	NES16009655	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130538785 () rs orientation: forward

Symbol	Name	Function Class
Caln1	calneuron 1	within coordinates
Rr621536	regulatory region 621536	148 bp distal
Tssr49069	transcription start site region 49069	1845 bp downstream