rs46068280 SNP Detail

Summary

• ID
  rs46068280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90405626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGGCGCG GAGTACTGTG CAGGACTGTG GCAGCTAAAG
  AGCAGAAGAC ACGGACTCAG GGAAGGGACA ACGACTAGAA GCAGAGCGAT CCGGGTTGTT
  R
  CAACCCTGCA ACCCGGGGAC AGGGTACGTT TGCCCAGCGC ACTAGCTTCT TTCACCCCCA
  GATTCTCCTG CCCATCCGTA AAGGATTTTG TTGCAGCTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	WSB/EiJ
ss60906960	NES15948674	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	WSB/EiJ
rs46068280					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906960	NES15948674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90405626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17720	CpG island 17720			within coordinates
Gm53295	predicted gene, 53295			within coordinates
Gm67990	predicted gene, 67990			within coordinates
Rr634196	regulatory region 634196			260 bp distal
Rr634197	regulatory region 634197			85 bp distal
Rr634198	regulatory region 634198			within coordinates
Rr634199	regulatory region 634199			143 bp proximal
Rr634200	regulatory region 634200			235 bp proximal
Tssr57646	transcription start site region 57646			79 bp downstream
Tssr62021	transcription start site region 62021			189 bp upstream