rs46068749 SNP Detail

Summary

• ID
  rs46068749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27494083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGGAAAA AAAAAAAAGC
  TTTAAAACTG AAATCCGACA GTTTGTTTGC AAAAAAAAAA AAATGTATTT ACTAATTTTA
  CAGGATGCAC CAATTAAGCC AACTGAGATA ATGCTTTGTG AGTTTCCAGT TCACCAAAAT
  GTATATAATA TTTCAGACCC TTACACTGAG TGAAATTCTG TACAGTATTG GACTACTAAG
  Y
  CATTTATACA TCTATTTCCA TACTGCAGTG CATATGGTTG TTATATGGAT GGCTTAGTTT
  TCTTTTTAAT TTATAGTTAA GATGTATCCA TCTTTAAGAT GCCACATAGA AGCTACAATA
  TTTTCATTTC GTAGTAATAG ACAGTAACTC TCGTAAAGAG CTGGTGAGAA TCCAGAGCTA
  ACATCCACTT GTCATCGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61265585	NES16880710	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46068749					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61265585	NES16880710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27494083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	1243 bp distal
Lama2	laminin, alpha 2	1062 bp upstream
Rr224629	regulatory region 224629	882 bp distal
Tssr97144	transcription start site region 97144	1273 bp upstream
Tssr97145	transcription start site region 97145	1262 bp upstream
Tssr97146	transcription start site region 97146	1196 bp upstream
Tssr97147	transcription start site region 97147	1183 bp upstream
Tssr97148	transcription start site region 97148	1150 bp upstream
Tssr97149	transcription start site region 97149	1040 bp upstream