rs46069599 SNP Detail

Summary

• ID
  rs46069599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GTCCAAAGCA TCCAGGTCCC
  Y
  AACCAGGAGT TCGGCCTGAG TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145709020	ENSMUSSNP6139090	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325406559	CHEV_17_47867568	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46069599					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041544 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	90 bp proximal
Tssr5147	transcription start site region 5147	1868 bp downstream
Tssr5148	transcription start site region 5148	1306 bp upstream
Tssr5149	transcription start site region 5149	864 bp upstream
Tssr145004	transcription start site region 145004	1877 bp downstream
Tssr145005	transcription start site region 145005	1856 bp downstream
Tssr145006	transcription start site region 145006	1827 bp downstream
Tssr145007	transcription start site region 145007	1795 bp downstream
Tssr145008	transcription start site region 145008	1774 bp downstream
Tssr145009	transcription start site region 145009	1746 bp downstream
Tssr145010	transcription start site region 145010	1364 bp downstream
Tssr145011	transcription start site region 145011	1345 bp downstream
Tssr145012	transcription start site region 145012	1328 bp downstream
Tssr145013	transcription start site region 145013	1276 bp downstream
Tssr145014	transcription start site region 145014	482 bp downstream
Tssr145015	transcription start site region 145015	467 bp downstream
Tssr145016	transcription start site region 145016	463 bp downstream
Tssr145017	transcription start site region 145017	14 bp downstream
Tssr145018	transcription start site region 145018	8 bp downstream
Tssr145019	transcription start site region 145019	22 bp upstream
Tssr145020	transcription start site region 145020	43 bp upstream
Tssr145021	transcription start site region 145021	69 bp upstream
Tssr145022	transcription start site region 145022	101 bp upstream
Tssr145023	transcription start site region 145023	128 bp upstream
Tssr145024	transcription start site region 145024	239 bp upstream
Tssr145025	transcription start site region 145025	583 bp upstream
Tssr145026	transcription start site region 145026	839 bp upstream
Tssr145027	transcription start site region 145027	1772 bp upstream
Tssr145028	transcription start site region 145028	1800 bp upstream
Tssr145029	transcription start site region 145029	1841 bp upstream
Tssr148459	transcription start site region 148459	1818 bp upstream
Tssr148460	transcription start site region 148460	1766 bp upstream
Tssr148461	transcription start site region 148461	1754 bp upstream
Tssr148462	transcription start site region 148462	1711 bp upstream
Tssr148463	transcription start site region 148463	1338 bp upstream
Tssr148464	transcription start site region 148464	1253 bp upstream
Tssr148465	transcription start site region 148465	492 bp upstream
Tssr148466	transcription start site region 148466	458 bp upstream
Tssr148467	transcription start site region 148467	10 bp downstream
Tssr148468	transcription start site region 148468	41 bp downstream
Tssr148469	transcription start site region 148469	131 bp downstream
Tssr148470	transcription start site region 148470	1808 bp downstream
Tssr148471	transcription start site region 148471	1827 bp downstream
Tssr148472	transcription start site region 148472	1843 bp downstream
Tssr148473	transcription start site region 148473	1860 bp downstream
Tssr148474	transcription start site region 148474	1879 bp downstream