rs46069781 SNP Detail

Summary

• ID
  rs46069781
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28045256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT TTAGGGGGGT GGGCGTGGCA
  M
  GGGAGGTTGG GCATGTATCC GCTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145419813	ENSMUSSNP416170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325349855	CHEV_17_27963227	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46069781					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28045256 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	within coordinates
Rr405125	regulatory region 405125	within coordinates
Rr405126	regulatory region 405126	975 bp upstream
Rr524320	regulatory region 524320	1005 bp distal
Rr524321	regulatory region 524321	within coordinates
Rr524322	regulatory region 524322	127 bp proximal
Rr524323	regulatory region 524323	954 bp proximal
Tssr143360	transcription start site region 143360	1033 bp downstream
Tssr143361	transcription start site region 143361	982 bp downstream
Tssr147072	transcription start site region 147072	238 bp upstream
Tssr147073	transcription start site region 147073	642 bp downstream