rs46070639 SNP Detail

Summary

• ID
  rs46070639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT TTAACAAGGA AGATGGGCTA
  R
  GAGAAGGCAA GGCCTGCCAG AGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146140256	ENSMUSSNP23979	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320111978	CHEV_1_172573735	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46070639					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	566 bp proximal
Olfml2b	olfactomedin-like 2B	928 bp upstream
Rr14047	regulatory region 14047	973 bp distal
Rr28935	regulatory region 28935	227 bp proximal
Tssr280	transcription start site region 280	740 bp downstream
Tssr9927	transcription start site region 9927	753 bp downstream
Tssr9928	transcription start site region 9928	845 bp upstream
Tssr9929	transcription start site region 9929	886 bp upstream
Tssr9930	transcription start site region 9930	919 bp upstream
Tssr9931	transcription start site region 9931	968 bp upstream
Tssr9932	transcription start site region 9932	985 bp upstream
Tssr9933	transcription start site region 9933	1181 bp upstream
Tssr14922	transcription start site region 14922	724 bp downstream
Tssr14923	transcription start site region 14923	775 bp downstream