rs46071658 SNP Detail

Summary

• ID
  rs46071658
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109690362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA CTCCAGTTCT AGGGGATTGG
  G
  CTCCCTCACA GCAATGCACA TAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136958060	ENSMUSSNP2624435	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323193587	CHEV_9_109763808	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46071658					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109690362 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	342 bp upstream
Gm68591	predicted gene, 68591	within coordinates
Rr401695	regulatory region 401695	1143 bp upstream
Rr687008	regulatory region 687008	1032 bp proximal
Rr687009	regulatory region 687009	1261 bp proximal
Rr687010	regulatory region 687010	1307 bp proximal
Tssr87256	transcription start site region 87256	306 bp upstream
Tssr87257	transcription start site region 87257	339 bp upstream
Tssr87258	transcription start site region 87258	352 bp upstream