rs46072416 SNP Detail

Summary

• ID
  rs46072416
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124143506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTGCACTGCT TGCCCGACAG GAAGCGGCAC TCAATAAATC TGCATTTTTT
  W
  AACCAGCTCA AAACAGTATC TGCATTTTAA AAAAAGTTTC CCTGAATGGT           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835801	NES16016894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46072416					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835801	NES16016894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124143506 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	within coordinates
Tssr48832	transcription start site region 48832	435 bp downstream
Tssr48833	transcription start site region 48833	1024 bp upstream
Tssr53284	transcription start site region 53284	174 bp downstream
Tssr53285	transcription start site region 53285	672 bp downstream
Tssr53286	transcription start site region 53286	1028 bp downstream
Tssr53287	transcription start site region 53287	1108 bp downstream
Vps37b	vacuolar protein sorting 37B	within coordinates