rs46072417 SNP Detail

Summary

• ID
  rs46072417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64655884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCACCAA GCTTGGGGAA
  CCTCTTTTCT CATGTTCTTG AAAGGTTTAA TTGGTCCCCT ACCCCCCCCC CCATCTTGGC
  TTCTCTCTGA TTGAAGGTAA AGACTAGGCA ACTACGTCAT TCTTCCAACC TGAGAAGGTT
  CTAGAATCTA GGCTCAAGAC CAGCAATGGA GCAGAAGACT CAAGTTCCAG CCTTCATCCA
  Y
  TCATCGGTGT TGTTTTCTGG GTTTGAGGTT CCACGTTCAG GAAACAAGAG TGTTTATGCA
  CTGGGTTGCC ATGCTCACTG AAACATCTTC CCCAAACAAT GAAATGTCAA CTCAGTCCAA
  CCACTAGATC TTAGCAACAC CTCTACAGGA AATCCTGGGG TCAGAAGAAC ATGGTAGATG
  CCATCACAGG TGCACGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61173088	NES16687339	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46072417					SNP	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173088	NES16687339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64655884 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	1387 bp downstream
Rr378042	regulatory region 378042	1243 bp upstream