rs46074016 SNP Detail

Summary

• ID
  rs46074016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191569068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTGACC TTTTGTTTGA
  AGACAATGTC CAAGTGGCTG CTGGGCTGAC TCTGCAAGTG GAGATGCCTT GGGGGTGGGG
  GGCACCCAGC AGCTACCCAG GCTGGTTCAT TGTCTAACCC TCTGAGACTC AGTTCCTCAC
  CGGTAAACAG AACATTAGTC CTGGAAAAGG TGAACTGTGT TTAAGGGCCT AGACCAGTCC
  W
  GAGCAAATGT ATTCCATGTG GCCCTGAGGA GGATCCAAAA GGGCTTGGGT TATAATGGAT
  GGGCTCTAAT AAAATGCAAA TATTTAAACT AAGGGGGGGG AGCATGAGTG AAACCAAGAA
  TAAATCCAAC ATAATTGCAG TAATTACACC CGGAGCCAAG CCTTGAGGGA GCAGAGCGCT
  CACTGAGGTA AGGCAGGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360511	NES15857506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46074016					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360511	NES15857506	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191569068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1227	CpG island 1227	1832 bp distal
Rr426232	regulatory region 426232	1657 bp distal
Rr426233	regulatory region 426233	1944 bp distal
Rr426234	regulatory region 426234	795 bp proximal
Rr426235	regulatory region 426235	1873 bp proximal