rs46076052 SNP Detail

Summary

• ID
  rs46076052
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCGTGC ATTTTCTTGA
  AATCCTTGGA TGCTCTTTGG AATAAGTACA AGGATAAGTC AATGATGTAG TCTCTGGTAA
  ATGTGTAGTC TCCCTCACAG GGTTCAGATT TCAGCTCATT TTCTATGATC TTCAAGATTT
  CATGAAAGTA ATTGTGACTG TAATCACGCT TTTGCTTCCA AATGTTTTTA AGTGTTTCTG
  T
  AAATTTTAAC CAAATGTTGT TGGTGGTCTT TTTGATGGAT TCAACATGAC AGGTTTCTGA
  ACTCTTTCTA TGTAAATGGT ATCTTTTTTT CATTTGAATA TGTTTGTCAT ACAAGATTTC
  AAACTTTTCT CTAGACTTTA TTTTTAGTCT TTCCACAATA TTTTTGTCCT TCTTGAAATA
  CTCCAGAAGG ATATTTTCGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145614814	ENSMUSSNP6614190	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46076052					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104908 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74119	transcription start site region 74119	1730 bp upstream
Tssr74120	transcription start site region 74120	1713 bp upstream
Tssr74121	transcription start site region 74121	1650 bp upstream
Tssr74122	transcription start site region 74122	1633 bp upstream
Tssr74123	transcription start site region 74123	1600 bp upstream
Tssr74124	transcription start site region 74124	1555 bp upstream
Tssr74125	transcription start site region 74125	1544 bp upstream
Tssr74126	transcription start site region 74126	1508 bp upstream
Tssr74127	transcription start site region 74127	1357 bp upstream
Tssr74128	transcription start site region 74128	1277 bp upstream
Tssr74129	transcription start site region 74129	746 bp upstream
Tssr74130	transcription start site region 74130	697 bp upstream
Tssr74131	transcription start site region 74131	486 bp upstream
Tssr74132	transcription start site region 74132	310 bp upstream
Tssr74133	transcription start site region 74133	339 bp downstream
Tssr74134	transcription start site region 74134	566 bp downstream
Tssr74135	transcription start site region 74135	649 bp downstream
Tssr74136	transcription start site region 74136	717 bp downstream
Tssr74137	transcription start site region 74137	783 bp downstream
Tssr74138	transcription start site region 74138	813 bp downstream
Tssr74139	transcription start site region 74139	847 bp downstream
Tssr74140	transcription start site region 74140	902 bp downstream
Tssr74141	transcription start site region 74141	1302 bp downstream
Tssr74142	transcription start site region 74142	1445 bp downstream