rs46076335 SNP Detail

Summary

• ID
  rs46076335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTAGCG ATGCCCATTT
  CTCCTCCCTT GTGTCCCCGT TCTCTTTGTC GAATTCTTCC ATCAGGGCTC TTGCCCTGGA
  AAAGTCTTCC GTTTGCTACG AGTGTCGTTT ACTTCATTCC TTCCCTTGCT CCTTTCCCCT
  TGCTCTTGGT CTCCTCCACA GCCAGGGAAC CTGCATTCTT CGTGCCACCC ATAAGGTTTC
  Y
  TCTTCCTCTC TGCTTATGAC ACTGATTTTG TTGTTGTTGC TGTTCGAGAC AGTCTTACTA
  GTGATGCTGG CCTAGAAATT ACTATATAAT TCAGGCCAGC GCTGAACATG CTGCAGTCCT
  CCTACCTCAG CTTCTGTGGT GCTGAAAATA TGGACCTGAT CCACCATACC TAGCTAGATT
  AATGTCACCT ACTTCACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52709797	NES15559272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46076335					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709797	NES15559272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	98 bp distal
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1590 bp upstream
Mettl6	methyltransferase 6, methylcytidine	816 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	1489 bp downstream
Tssr124944	transcription start site region 124944	761 bp downstream
Tssr124945	transcription start site region 124945	675 bp downstream
Tssr124946	transcription start site region 124946	561 bp upstream
Tssr127965	transcription start site region 127965	1591 bp upstream
Tssr127966	transcription start site region 127966	871 bp upstream
Tssr127967	transcription start site region 127967	802 bp upstream