rs46077022 SNP Detail

Summary

• ID
  rs46077022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86056646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC AGTGAGTTTG CATTTGGTTT
  Y
  TAAAAGCAAA TTCATAATTA TAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133354678	ENSMUSSNP1165939	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321845693	CHEV_6_86029658	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46077022					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86056646 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633329	regulatory region 633329	1570 bp distal
Rr633330	regulatory region 633330	357 bp distal
Rr633331	regulatory region 633331	within coordinates
Tssr57448	transcription start site region 57448	1601 bp downstream
Tssr57449	transcription start site region 57449	1575 bp downstream