rs46080494 SNP Detail

Summary

• ID
  rs46080494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148890677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CTGGAACTAG AGTTACAGGT
  R
  GCTGTGGGCT GTCAGGTAAG TGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss144698476	ENSMUSSNP4288016	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321719742	CHEV_5_149765443	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46080494					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148890677 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15410	predicted gene 15410	674 bp upstream
Gm50627	predicted gene, 50627	671 bp upstream
Gm52833	predicted gene, 52833	1927 bp upstream
Rr625335	regulatory region 625335	1125 bp distal
Rr625336	regulatory region 625336	1210 bp distal
Rr625337	regulatory region 625337	685 bp distal
Rr625338	regulatory region 625338	380 bp distal
Rr625339	regulatory region 625339	25 bp distal
Rr625340	regulatory region 625340	526 bp proximal
Rr625341	regulatory region 625341	845 bp proximal
Tssr54595	transcription start site region 54595	1890 bp downstream