rs46080679 SNP Detail

Summary

• ID
  rs46080679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76041731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGATGCA GAGGCAGGCA
  GATCTCTATG AGTTTGAAGT CAGCCTAGTC TACATAGTGA GTTCCAGGAC ACCAGAGCTA
  TACAGCGAGG TAGACCCTGT CTTAAAACAA AACATCTAGC AATTGGCTCA CACTCCAATG
  AGGCTCTATC TTAAATAAGA CGCATCTTAA ATTTGGTGTT CTCTCAGTCA CGTTGGGTCC
  Y
  TTTTATCCCA GGAGTTGGGG ACCCTCAGGA CACCCTGCTG TGTCAGACAG GGAGACAGAG
  TGGGGCTGGA GATAAGAGGT TCTTCTACCT CAGAACCTTC TGGAGTGGAT AGCCGGATAC
  CTCCCATTCC TATCGAGGTG TGCTGTTCAT TTTTTTGAGA CAGGGTTTCT CTGTGTAACC
  CTGGCTGTCC TGGAACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148164936	ENSMUSSNP3161632	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46080679					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76041731 () rs orientation: forward

Symbol	Name	Function Class
Gm62598	predicted gene, 62598	1451 bp upstream
Rr390932	regulatory region 390932	198 bp upstream