rs46080685 SNP Detail

Summary

• ID
  rs46080685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94523192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGTCC TCTCTTCTAT
  TTTAATCAGA GCACTCTTGC CTTTCTGATG TAAATGTATC CATGTTAGAG TTCAGCTCTC
  AAGTGGCTGC CAAAGGCTCA GAAGTTAAGG CTTTAGCACG AGCGTGGGAC ATGGGCGAGG
  GGCTCTGGTA CTTTCAGGAG GCGAGGGCTG CTGGAAGGTC TGTGATCCTT TTGGAACTCC
  Y
  GCTCAGAGCC CACTGGCTGT GCCTCTGATA GGGACCTGCT GTCTTTTGGG AAAGGCACAG
  ACAGCATAGC GCTCGGGCTA TGCTGGGAAG TGGGTGGGAG AGGAGAGGAG CAAGAGAAAG
  GTAAGGTCAG GAACCAAGAG AAAGCTTATC AGCTCCCGGA CTCTAGAATC ACCTGGGAGA
  TGGGTCTCTG CGTACACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60514135	NES16533887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46080685					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514135	NES16533887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94523192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8506	CpG island 8506	1868 bp proximal
Gm41505	predicted gene, 41505	within coordinates
Gm41507	predicted gene, 41507	994 bp downstream
Rr1836	regulatory region 1836	821 bp proximal
Rr520192	regulatory region 520192	261 bp distal
Rr520193	regulatory region 520193	within coordinates
Rr520194	regulatory region 520194	1522 bp proximal
Tssr139566	transcription start site region 139566	433 bp downstream
Tssr139567	transcription start site region 139567	365 bp downstream
Tssr139568	transcription start site region 139568	342 bp downstream