rs46080733 SNP Detail

Summary

• ID
  rs46080733
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52741240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGATAC TGGAGGATGC
  TTGTAGGTCA ACTCCTTCTG AATCCAGATG TGGAAAACAA GCTACATAAA GTCCATAGCA
  CATCCCTAAA ACACTATATG TTCTCAGTGT GCAGGTACTT ATTGAAGCCA GAAGTCACAG
  ACAAACATTT CAACACCATC ATGGACTTGC AATGCTGTCT TGTAGAAAAT TGTAATTGAT
  W
  TTTTAGCCTA CAAGGTTTCC TTAGCAATCT TATCTATGTT TGTGGTTTAA ACTGTCCCAA
  ATCTTCACGC CTGCCCAAAT TTATAGTAGT TAACTGTGTG CCTGACAGCT CCCTGTAGAA
  TATTCCAACT TCAAATTAAA CCCAACATTA AATCCAGGTC ATTATGTTTC CCCTTTTCTC
  TCTCTTTTCT GGATTTCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60731917	NES16372443	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46080733					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60731917	NES16372443	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52741240 () rs orientation: forward

Symbol	Name	Function Class
Gm29670	predicted gene 29670	191 bp downstream
Mfsd6	major facilitator superfamily domain containing 6	within coordinates