rs46082389 SNP Detail

Summary

• ID
  rs46082389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:128563381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGTTTTT CCCCACATAA ATGCTTGCTT TCCCTTCCTC
  AGCACCTTTA CTGACTACTT TGGAGACCTC TTTACTGCAT GTTCTTCCTG AATCCCAGGG
  S
  CTGAAGCTGG TAAGTGTTAT GTTACTGGAT CTAAAATGTC TCCCATGGGC TCTTATGTTT
  TAAAATTTGG TCTCCTGCTG GTGGAGCTGT TTTGCAAGGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60676830	NES16242668	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46082389					SNP	G	G	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60676830	NES16242668	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:128563381 () rs orientation: forward

Symbol	Name	Function Class
Rr175451	regulatory region 175451	within coordinates
Rr183484	regulatory region 183484	1517 bp proximal
Rr191605	regulatory region 191605	within coordinates