rs46083172 SNP Detail

Summary

• ID
  rs46083172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTTTGG ATGAAGATGT
  AAAACTCTCA GCTCCTGCTG CATCTAGCCT GCCTGGACAC TGCCATGCTC CCACCTTGAT
  AGGAGACTGA ACTTCTGAAC CTGTAGGGGT AGAGAATGTG ACCCACAGAA ACACAGCTTA
  ATGACAGATT GCTGTAATAA CAAGAGGTTT TTATTCCGAT TCGTGGGGTC GCTCAGCCTT
  R
  CAGGGAGAGT CAACCCTGAT TGTCCAAAAT ACAGCTATTT TATACTCTTT TGAAGGTGTT
  TACACAGCTA TATTATTATT GGCTAGTAAA GCAACCGTAT AATTTATTTG TTTGTTTGTT
  TTTCTTTTTG GTTTTTTTGA GACAGGGCTT CTCTGTATAG CCCTGGCTGT CCTGGAACTG
  ACTTTGTAGA CCAGGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148207650	ENSMUSSNP4020321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46083172					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1248 bp upstream
Rr569443	regulatory region 569443			607 bp distal
Rr569444	regulatory region 569444			761 bp distal
Rr569445	regulatory region 569445			160 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			1894 bp downstream