rs46084780 SNP Detail

Summary

• ID
  rs46084780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG AGCCGCGGGT GGGCAGCAGG
  R
  CTGCCGGCTG GGGTGAGTGC AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148232703	ENSMUSSNP5145227	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320607037	CHEV_2_164705149	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46084780					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721569 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445K14Rik	RIKEN cDNA 4930445K14 gene			within coordinates
Cpgi12676	CpG island 12676			within coordinates
Gm75548	predicted gene, 75548			within coordinates
Pcif1	phosphorylated CTD interacting factor 1			Intron
				mRNA-UTR
Rr397480	regulatory region 397480			138 bp downstream
Rr397481	regulatory region 397481			154 bp upstream
Rr569748	regulatory region 569748			1735 bp distal
Rr569749	regulatory region 569749			1030 bp distal
Rr569750	regulatory region 569750			965 bp distal
Rr569751	regulatory region 569751			282 bp distal
Rr569752	regulatory region 569752			within coordinates
Rr569753	regulatory region 569753			246 bp distal
Rr569754	regulatory region 569754			140 bp proximal
Tssr21683	transcription start site region 21683			251 bp downstream
Tssr21684	transcription start site region 21684			367 bp upstream
Tssr21685	transcription start site region 21685			396 bp upstream
Tssr27592	transcription start site region 27592			86 bp downstream