rs46085638 SNP Detail

Summary

• ID
  rs46085638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101018783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCTCCCC GCCCCCTCCT CTCTCCTTTT CATTTGTAAG
  AGAGTTTCAA GTAGCCCAGG TAGGCTTTAA ATGAATACTG TCTTCCTTCA GCCTCCTGAG
  Y
  GCTGGGATTA CAGGTCGGCT CTTCCAAGCC CAGCTAATGT CCTGTTTCTA GGTGCTTCTC
  AGCCTTTGGG AAGTAAGGGG CCAGGGAACA CCTCCTCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145550918	ENSMUSSNP2084443	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46085638					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101018783 () rs orientation: forward

Symbol	Name	Function Class
Arap1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	within coordinates
Rr152366	regulatory region 152366	983 bp distal
Rr152367	regulatory region 152367	1018 bp proximal
Rr159072	regulatory region 159072	982 bp distal
Rr159073	regulatory region 159073	within coordinates
Rr162868	regulatory region 162868	1206 bp distal
Rr168321	regulatory region 168321	1783 bp distal