rs46085876 SNP Detail

Summary

• ID
  rs46085876
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50593566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTATATC TCTACAAAAA
  ATATGTACCA ATTTACATAA TTAAAAATAA CTATTTTTAA CAGTTCCAGG AGCTGAAGAT
  TGCCACCTGA CCTTCAGAGA GCCCCGGGGC TCTTTCCCCC TCCCTTGGAG CCTCCTCTTG
  CTTATGCTTA TATTGCCACT CCTGAATAAA GTTTTCAGAG CATGATAAAA AAAAAGGAAC
  K
  TCTCAATAAA TATGTTTAAT TGGGAAGTAA AAAGACTTTG GTGTTAGCTC AGAAGGTAAA
  GTGTTTGCTC TACAATCATG AAGATCTGAG TTTGAATACC CAAAACCCAC AGACATTATG
  ATGTGGTAGA ATACACATCT GTAATCCCAA GACTCCTACT GTGAGATGGG ATGCAGGAAC
  TCACAGGGTA GCTAGGCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135164046	ENSMUSSNP5634299	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss320758962	CHEV_3_50443039	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46085876					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50593566 () rs orientation: forward

Symbol	Name	Function Class
Rr576165	regulatory region 576165	787 bp proximal
Rr576166	regulatory region 576166	1791 bp proximal
Tssr33183	transcription start site region 33183	1689 bp upstream