rs46085962 SNP Detail

Summary

• ID
  rs46085962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGATAC TGAAAAAGAT
  ACTAGTTAAG CCAGGAAGGG TAAACAAACT CAACTCAACA AGTGCCACAT CTGAGCCTAG
  CCCTGGCTGC CACTTGTAGG ATACCATCAC TTATTCTTAG ATAGATGTTA GAAGAGACGA
  CAGCACAAAT GCCATCATGT ATTTGCCATC TGTGGTTTTG CAATATGGGC AAACTTATCC
  M
  GAGACAGGAG GCCTCTTTGT AAACTGGAGG CTGCAGACTG AAGGGAGGGG TCCAATAGGA
  AAAAAGACAA ATGGGGCGTG AGTAGCTAGG GCATACATGG GGGTCTGTGC TGGAAAACAG
  ATCTGAGGGT GGCCTCTTTG ATTCTACTGG GTAAAAGGCA GAGTCTGACA GGCTGGAAGC
  TAAGCCAAGG CTTGGCGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584125	NES15645642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46085962					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584125	NES15645642	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254173 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	Intron
Rr404655	regulatory region 404655	1501 bp upstream
Rr510623	regulatory region 510623	1651 bp proximal
Tssr136772	transcription start site region 136772	1172 bp upstream
Tssr136773	transcription start site region 136773	1090 bp upstream
Tssr136774	transcription start site region 136774	1022 bp upstream
Tssr136775	transcription start site region 136775	979 bp upstream
Tssr136776	transcription start site region 136776	957 bp upstream
Tssr136777	transcription start site region 136777	913 bp upstream
Tssr136778	transcription start site region 136778	1509 bp downstream