rs46086114 SNP Detail

Summary

• ID
  rs46086114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83402917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCACTAT TCCAGACCTA
  AAACAGTTGG TTCAAATTGA AGGAATCAGC TACACTTTTA TAATTCATTT CTTTAATGAG
  AGTTATAGTT TCTATAATCA GCTGAAAAAT GTTCTGGCAG AATTCTTTCT CTCTTAGCAT
  TGAGTTTAAA TATTAAATAT TCATGCTTAC TCTATAACTC CAAATTCATT CTAAAATAAT
  Y
  CTTTTCAAAT CTTATAGGTA TTGTTTGTTT TCTACTCTTT TAATATTTAA TAAAAAATAC
  CAACTGTGTA GCTATGTATG TTCCCACAGC ATTGTGAACC TTGTGGGTTA GCCCAACAGA
  TATTACTGAT GTTTTGCCAT TATTCCTTTT ATGAAGCCTG CCATCCTTGC CACACCAGAG
  TAACTATCAT GCAGGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60760706	NES16400813	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		T	C		T	C	T
ss144833228	ENSMUSSNP1822764	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46086114					SNP	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60760706	NES16400813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83402917 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1400 bp downstream
Gm69621	predicted gene, 69621	1064 bp downstream