rs46087418 SNP Detail

Summary

• ID
  rs46087418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90789094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCACT TCAACTGTGA
  CCAGATGCCT GAGGTGTGAG TGAGTGGTAG TCAGCCTTGC ATGACTGCCT GCCCCTGGGT
  AGAATTGTAA GACAGGACCA CCCAACAATC TACATGTTCA GGCTGAGGCT GACATAGAGC
  ATTTCATAGC CAGTTTCTGG ACCCATGTCC CCATCTCATC CCTACAGTCT AGGAGAAGCA
  R
  ACGCCTCCAG GGCTGGTTCC AGAAATTTCC TATCTAGGAC TTTGCCTCAT AGACTGGAAA
  ATTCCAACCT GCAGGCTGAT AGGGATATTC AGGCAGAGTG TCTCTGTCTT CCAACCTGTG
  GCCATCTGTC CCCTAGGCAG GAGCATAACA ACATTTGGGA AGAGGGAGAG AAGGCTGCTG
  GCACATGACA AGGAGATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908462	NES15947991	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46087418					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908462	NES15947991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90789094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1756 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634330	regulatory region 634330	2000 bp distal
Rr634331	regulatory region 634331	1499 bp distal
Rr634332	regulatory region 634332	1880 bp distal
Rr634333	regulatory region 634333	109 bp proximal
Tssr62054	transcription start site region 62054	1952 bp upstream
Tssr62055	transcription start site region 62055	1893 bp upstream