rs46087600 SNP Detail

Summary

• ID
  rs46087600
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45177332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGACCTC CCAGATGTCA CTTCTAGCTC TGAGTCCTAC
  AGGGTGAGAC CATCTTGTAG CCAGACCCTG TGCAGATCCA GTGTGGATTG AAGGGTTCCA
  S
  TGTGGCTAGC TAACTGCCCT GGGACTCCCC AGAAATTGTC TTGGATTTTT TTTTTTCATC
  AGTACATCTT CCAGCCTCAA AGGTACAAGC TGGGAGATTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss61388309	NES16764914	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs46087600					SNP	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388309	NES16764914	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45177332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il10ra	interleukin 10 receptor, alpha			Intron
				Noncoding-Transcript-Variant
Mir7086	microRNA 7086			609 bp downstream
Tssr84758	transcription start site region 84758			1139 bp downstream
Tssr89257	transcription start site region 89257			1844 bp upstream
Tssr89258	transcription start site region 89258			1800 bp upstream
Tssr89259	transcription start site region 89259			1783 bp upstream