rs46088200 SNP Detail

Summary

• ID
  rs46088200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAACCAG GCCTGGCTTT
  TTCATGTGGA TCAGAGGACT GAGTCCACTC TGGTTTTTCA CTGTTGTGTA GCAATCACTT
  TAGTAACAGG GTCTTTTCTC TGGACTGATT TAAAATATGT ACTCAAATTT CCCATTGAAC
  CTCATAAACC CTCCGACATA TATGACAATT TTTATGCCCA TTTAAAGGAA AAGAGGCTGA
  Y
  TTTGTTATGT GTCTATGTGT CTAATCTCTT AAACATAAAG ATTGATTACA TCTAATATGA
  ATTGACAGTG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGGA
  GAAATTCTAA ATTTTAGGAT TATTGTACAA AATGTTTGTT TCTCTTGACT AATTTCTCAG
  TTCTCTGCCA GTGTTAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146487440	ENSMUSSNP5048175	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46088200					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257563 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1744 bp upstream