rs46088863 SNP Detail

Summary

• ID
  rs46088863
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97140454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCATCTT AAGCTGGAAA
  ATGGACCCGC AGCAGAACTC AGAAAATGAA ACATAAGCTT CTTCGCTTCT TGCCTCCTGA
  TCCTTGCTGT CTGTGTCATT TCCCATAGCA ACTGTCCCAA GTGTGATCCC TACTGTTCTA
  CATTGTGAGG TCTGTCTTTC TTGCTTCATC CCACCTTGGG AGAACCAGGC AAAGCTGTTT
  C
  TGCCTTCTGT TTGGCTTTTA TCCCTTTCTT TAGTAAAATC TTAAAGTGAT AGCCTCTTCC
  CCTTTCTTTT CATCCAAATC CATCCAAAAA CCAACCCACA CGGTAGTTTC TTTGTTTGTA
  AATACTCCAG CCAGGCTCCT GCTACAGCCT CACCCAGCTG CCAAATCCAC CAGTAACTGT
  CTTCCCACCT CAGCCTTCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135520668	ENSMUSSNP234365	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46088863					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97140454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl9	B cell CLL/lymphoma 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr581471	regulatory region 581471			1936 bp distal
Rr581472	regulatory region 581472			450 bp distal
Rr581473	regulatory region 581473			1685 bp proximal