rs46089005 SNP Detail

Summary

• ID
  rs46089005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12850391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGTACTG TTGAGTTCCG TCGACGTTTC TGGGAGACCA
  GCTCTTTTCT CGGGGGAGGG GGATGTTCTT TTAAAGTTCT CTCTGAAAGA AAATGGGTTT
  Y
  TTAAGTCTTC ACCTAGAGAC ATCATGGTTT ATCTTCTCAG TGGCTCATAC GTAGTAGAAA
  CTGATTTTCT GTAGGTATGA CTTTGCCAAA CCAGCTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146806623	ENSMUSSNP4286010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46089005					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12850391 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	158 bp upstream
Tssr92373	transcription start site region 92373	1056 bp upstream
Tssr92374	transcription start site region 92374	1582 bp upstream
Tssr92375	transcription start site region 92375	1671 bp upstream
Tssr96740	transcription start site region 96740	35 bp downstream
Tssr96741	transcription start site region 96741	948 bp downstream