rs46089303 SNP Detail

Summary

• ID
  rs46089303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119012204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGTGT GTGTGAGTGT
  GTGACCCTGC CAGGACCCTG GGTGACAGAG TAGTAAGATG CTTTCTGCTG GGCAGGCTCT
  CCTGTCCTGA GTTCTGACAT CTCTGTCAGT GGACACACAG TCCTGGGGCA CACACAGTTG
  TTGCTCTTTT CTATTAGAGG TTTTCTAGCT GATTCTCTAG GGCCCTGCTA TGGATCCCAT
  S
  GTTGCTTTGG AAGCAGCTCC CCACCTCTCC AGGGCTCTAA CTATCCCTAA GGCAGAGAAG
  GTTGTGTGCC TCCTAATTTC GCAAGGTGGG GCAGAGCACA CCTGGGTAGA AAGATCCAGA
  CAGATCCTTC CTGTCCTCTA ATGCTAGTAG ACCCACCATG GGCAAAGCTG AGCTTTCAGG
  CTCTCCACAG TAGAAGAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60667032	NES16246332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46089303					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667032	NES16246332	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119012204 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	within coordinates
Cpgi21109	CpG island 21109	776 bp distal
Rr382714	regulatory region 382714	156 bp upstream
Tssr79649	transcription start site region 79649	1863 bp downstream
Tssr79650	transcription start site region 79650	1847 bp downstream
Tssr79651	transcription start site region 79651	1832 bp downstream
Tssr79652	transcription start site region 79652	1801 bp downstream
Tssr79653	transcription start site region 79653	1727 bp downstream
Tssr79654	transcription start site region 79654	1698 bp downstream
Tssr79655	transcription start site region 79655	1662 bp downstream