rs46089472 SNP Detail

Summary

• ID
  rs46089472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA AGGCCAATGA ACTCAAATGG
  R
  AAGGCACGGT ACACAGGAAA GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61394059	NES16775925	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		A
ss136454963	ENSMUSSNP3897843	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss322954385	CHEV_9_48303055	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46089472					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394059	NES16775925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406250 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1029 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	492 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	within coordinates
Rr195326	regulatory region 195326	1751 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	268 bp upstream
Tssr2862	transcription start site region 2862	922 bp downstream
Tssr84988	transcription start site region 84988	99 bp upstream
Tssr84989	transcription start site region 84989	122 bp upstream
Tssr84990	transcription start site region 84990	261 bp upstream
Tssr84991	transcription start site region 84991	311 bp upstream
Tssr84992	transcription start site region 84992	418 bp upstream
Tssr84993	transcription start site region 84993	456 bp upstream
Tssr84994	transcription start site region 84994	953 bp upstream
Tssr89390	transcription start site region 89390	542 bp upstream
Tssr89391	transcription start site region 89391	523 bp upstream
Tssr89392	transcription start site region 89392	493 bp upstream
Tssr89393	transcription start site region 89393	32 bp downstream
Tssr89394	transcription start site region 89394	316 bp downstream
Tssr89395	transcription start site region 89395	324 bp downstream
Tssr89396	transcription start site region 89396	371 bp downstream