rs46089634 SNP Detail

Summary

• ID
  rs46089634
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184467952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCTAAAAA CTTTGCAAGT TGCTGCTGTG
  CCTAGGGCAT CTGCTCATTT GTGATTACTA TCTATACAAC CAGACCTCCC CCTTTTCTTT
  TCCAGAGAAG GCACACAGCC AAAGATTATT TCGCAATACC AAGAATAGTC AAGGTCAAGG
  M
  AGGTCCCCTT TAGAATTTGA CAATGTGGTT TACGGGGATT TAAGCTAAAG GAAAGGATTC
  GATGCAAATA CAACACTCAG GCAGGAGGCC CAACTGGTCT CTCTTTGGTT CTCTCTTTTG
  CTCAGATGAG CAAATTCTTG CTTTAGACCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60355372	NES15858932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	A		C	A	C		C
ss320168852	CHEV_1_186559634	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46089634					SNP	C	C	C	A	C	C	C	C	A	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355372	NES15858932	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184467952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1009 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	1588 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10590	transcription start site region 10590	346 bp downstream
Tssr15648	transcription start site region 15648	728 bp upstream