rs46089959 SNP Detail

Summary

• ID
  rs46089959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121801413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAGGT GGAGCAAGCC
  ATGAGAAGCA AGCCAGGAAG CAGCATCTTC CATGACCCCT GCATAAGCTG CTCCTTCCAG
  GTTCCTGCCC TGACTCCCCT CAGTGATGGA CTGTTAGTTA CGAGGGTAAG CTAGATGAAC
  CCTTCCCCCC AGTGACCCTA AGACTTGGTC TTCCTTCACT TTTGTCATTA GCTGTTCCTG
  R
  ACATCTCATC TCCCTGTGGC CATCAAAGAC AGGACCTTTC CTTCCAGCAT CCATCCATGA
  TGGCTTCTCA TTGGCTATGG AGGGGCTGTG TGTGATTTCT ATGTGGTCAT CTTGTTACTC
  TCCTCTACTA ACTTCATGAT ATCCTCCACC CATATGCGCA TGGGCAGTTG GACAGGGCGC
  GGACATGCTG AGGTCAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61238674	NES16858074	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46089959					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61238674	NES16858074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121801413 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates
Rr689132	regulatory region 689132	1955 bp distal
Rr689133	regulatory region 689133	1705 bp proximal