rs46091935 SNP Detail

Summary

• ID
  rs46091935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAACCT ACAGTTGGAG
  TCTGGAGGCC TGAAGGTGGC ACTGGTCCAA GTCCTGGAGT CTAAAGCCTG GAGTTCTCAT
  GGCCAATGTC AACAGAAGAA GAGGTCAAAA TGCCTCTTCT GTGGTAGAAG GAGAGTACAT
  TCTCTCTAGT TCTATGGTCT CCAGGTTCTT GAATGGTACT CACACACACT GAAGGTGAAC
  W
  TTCCCCATCA AATGTGCTCA CACTCACTTC TCAGTCTCTT CTGGAAAGAC CCTCGCAGGC
  AATCCCCAAA CCACTCCTTA GTGCAATTGA GTTTGCCACC TGGAACTGTC ACAAACAGGC
  CCCACATCTA CAAATTAACT CAGCCTGTTT TACTATGGAA GAAACTACAA GTCCTTGTAG
  GAGCAGAAAG GTGTAACACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020663	ENSMUSSNP7217585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46091935					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1211 bp proximal
Gm55211	predicted gene, 55211	962 bp upstream
Gm55212	predicted gene, 55212	1473 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	1113 bp proximal
St7	suppression of tumorigenicity 7	1116 bp upstream
Tssr55085	transcription start site region 55085	1143 bp upstream
Tssr55086	transcription start site region 55086	1441 bp upstream
Tssr55087	transcription start site region 55087	1501 bp upstream
Tssr55088	transcription start site region 55088	1541 bp upstream
Tssr55089	transcription start site region 55089	1587 bp upstream
Tssr55090	transcription start site region 55090	1706 bp upstream