rs46092079 SNP Detail

Summary

• ID
  rs46092079
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38409744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATGCCTTTA ATCCCAGCAC TCGGTAGGCA GAGGCCAGCC
  TGGTCTACAG AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGTAACCCT GTCTCAAAAA
  C
  CCAAAAAAAA AAAAAAAAAA AAAAAAAAAG AAGTGTTAGC TGACCTGCAG TTGTCTATGT
  GGACCATGTT GAAATGTAAC AGCCTGTATC TTCCTGACAC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133127274	ENSMUSSNP3531416	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46092079					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38409744 () rs orientation: forward

Symbol	Name	Function Class
1700021L22Rik	RIKEN cDNA 1700021L22 gene	within coordinates
Cpgi17310	CpG island 17310	331 bp proximal
Gm53284	predicted gene, 53284	within coordinates
Rr368055	regulatory region 368055	832 bp upstream
Rr628818	regulatory region 628818	within coordinates
Rr628819	regulatory region 628819	860 bp proximal
Tssr55646	transcription start site region 55646	1042 bp upstream
Tssr55647	transcription start site region 55647	1060 bp upstream
Tssr55648	transcription start site region 55648	1104 bp upstream
Tssr55649	transcription start site region 55649	1527 bp upstream
Tssr60412	transcription start site region 60412	834 bp downstream
Tssr60413	transcription start site region 60413	910 bp downstream
Ubn2	ubinuclein 2	1116 bp upstream