rs46095253 SNP Detail

Summary

• ID
  rs46095253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161403664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAAGG TTTTATAAGA
  ATGAAACGCA GAGGAAAGCT TCAGGGCAAG GAAGAAAAGA GTGGAGACAG TGAGAATCGC
  AGTTCATAAG GCAGAGTTCA CACAGGCACT GACTAGTGCG GCATCCATCA AAGGGGCTTT
  CCTCAAAGTG ATTTGGAAGG GAACCTTCCA GCACTGCAGC AGTAAAGCCA AAGCAAGCAG
  Y
  GTGAGCTCTG TGCATGCTGC CAAGGAAGCA GAAAGGATGG CGAGAACTGG ATTGGCTGAG
  CAGGGCTTCA TGTGTAAATA CACTATAGAA TGTTAAAACA AAAAGCCCAA ATGGGAATTT
  GTACAGAGAA GCGTATGCTC TGGGATAGTT CCTTGGCAAG TTAGCGCCAC TGCTATTCCA
  AGGAAACCCT GCATTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336173	NES15834524	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46095253					SNP	C	C	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336173	NES15834524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161403664 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421814	regulatory region 421814	within coordinates