rs46095406 SNP Detail

Summary

• ID
  rs46095406
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11560588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTCCTGAAC CTGTCTTCCT GAGACATTCC TGAATAAGCA
  ACAGCCTGGC GACTAAGTGC TGACAGAATG GCTCCAGGCA CCAAGAATGG ACTTGGGGGG
  S
  GGGGGGGGGA TGGGCCTTCC CCCTTATAAG CACACTCTCT TAGTAAACTC TCAGGGCCTT
  GATCAGAAAA ATTGTCTTGG CTTCATCATT CTTCTCTCGC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147282704	ENSMUSSNP2252691	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46095406					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11560588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11203	CpG island 11203	1561 bp distal
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	1706 bp upstream
Rr396770	regulatory region 396770	1581 bp downstream
Rr551813	regulatory region 551813	1711 bp distal
Rr551814	regulatory region 551814	1310 bp distal
Tssr16127	transcription start site region 16127	1737 bp downstream
Tssr22641	transcription start site region 22641	1816 bp upstream