rs46097393 SNP Detail

Summary

• ID
  rs46097393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGGGTCA CTCCTTTCTG
  TGCTCTGAGT GCGTTTTGTG GTTGTGTGGT TGGCACATTA CGGCTTGGCG TAAAGCACTG
  TTTAGAAACT AAATAAATAA AAAATAAAAA AGTGGAAATA CTAAAGGTGT AGTTTTCTTC
  CCTCTGCAAG GCTGTCAGGC AGGTTTCCAG CAGAGCTGGG CCAAAGGACC AGAATCAGGA
  M
  CGCTGTCTGG GAGCTACCCA CCATCACGGT ATGGTATCTA GGCACATCCT CATCACACAT
  CAGAGGGAAA GAGTGCTTCC CCTGCCACTA GAGGAATGAG ACTGTGTGCT GCGTGCGTGC
  GACTGTGGCC ATCAGTTCGT ACTCAGTGGG ACCCCAGGTC CTGACAAATT GAGCTGGGCA
  CGTGGCAGGG TTCTATAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145451967	ENSMUSSNP2714034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss322761680	CHEV_8_90329149	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46097393					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531878 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	848 bp upstream
Tssr82325	transcription start site region 82325	787 bp upstream
Zfp423	zinc finger protein 423	within coordinates