rs46097611 SNP Detail

Summary

• ID
  rs46097611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148370788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCCAGC AAAGGAAAGT
  CAGGAAAAGG AACGAAGGCG GCCAGAAAGG ATGATGGACG GGAAAGAGCA AAGGGTGTGC
  ATTTGAAAGA TAACCCTGGG AAGGAGAACA GCCAGCAAAG AGCACTAGCA AAGATTGCAG
  ACCCTGGAGG CAGAAGATAT GCCAGGAAGA GGTCTGAGTG GTCATGGGGG CGAAGAGTCT
  R
  AAATGGACAC TGAGCTTCAA ACCAAGACTG TAAGGCGCCT GCCTGCCTGC CTGCCTGCCT
  GGCTGGGCTG CTGCCCGGAG CTTCCCTTGA GCCTAACAGC TGCTTCTCTC CTTTTGGCAG
  ATACTCTGAT TCGGGGAGGT CTGCAGTAGA AGAGGAGGGG GCTGATTGAG CCTGTGTGTT
  TGTGTGTGTG CACGCCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148000178	ENSMUSSNP4980322	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46097611					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148370788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15301	CpG island 15301			389 bp proximal
Disp3	dispatched RND transporter family member 3			Intron
				Noncoding-Transcript-Variant
Gm68159	predicted gene, 68159			1936 bp upstream
Rr604638	regulatory region 604638			1449 bp distal
Rr604639	regulatory region 604639			within coordinates
Rr604640	regulatory region 604640			1624 bp proximal
Rr604641	regulatory region 604641			1823 bp proximal
Rr604642	regulatory region 604642			1947 bp proximal
Rr604643	regulatory region 604643			1966 bp proximal
Tssr44603	transcription start site region 44603			1596 bp downstream