rs46097761 SNP Detail

Summary

• ID
  rs46097761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG AGTCAAGATT CAGGCTGTAT
  Y
  GCTTTTATTT ACGAAATTAT AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146469455	ENSMUSSNP4699124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325827257	CHEV_19_47806776	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46097761					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	165 bp distal
Gm58934	predicted gene, 58934	727 bp upstream
Rr370527	regulatory region 370527	1012 bp downstream
Rr406020	regulatory region 406020	47 bp downstream
Rr549123	regulatory region 549123	738 bp distal
Rr549124	regulatory region 549124	1068 bp distal
Rr549125	regulatory region 549125	927 bp distal
Rr549126	regulatory region 549126	799 bp distal
Rr549127	regulatory region 549127	594 bp distal
Rr549128	regulatory region 549128	within coordinates
Sfr1	SWI5 dependent recombination repair 1	within coordinates
Tssr156884	transcription start site region 156884	518 bp downstream
Tssr156885	transcription start site region 156885	489 bp downstream
Tssr156886	transcription start site region 156886	659 bp upstream
Tssr156887	transcription start site region 156887	1366 bp upstream