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rs46098092 SNP Detail
Summary
  • ID
    rs46098092
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:137045034 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCCATTAGCA TCCTCCTCTA GTAAGCCTGT ACCTAAACGT
    ATATGAAAGA TTAATTGGTT GGGATGTGAA ATCTGTGACT GCGGAATTCA GGAATCTTCT
    R
    ACTCCATTCT TCACACAAGC ACTGTGTTCA GGGGTCGGGC TGTGCAACCA TCCTGTATAA
    AGCAGTCATC ACTAAGAGCA AAGAGGCTAC TGGTTGGTG                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss135939673 ENSMUSSNP2973519 ENSEMBL ENSEMBL_Sanger f SNP G G A
ss320975380 CHEV_3_137002237 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs46098092 SNP G G A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:137045034 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Emcn endomucin 1790 bp upstream
Rr585936 regulatory region 585936 1514 bp proximal
Tssr31897 transcription start site region 31897 1759 bp upstream
Tssr31898 transcription start site region 31898 1803 bp upstream
Tssr31899 transcription start site region 31899 1830 bp upstream
Tssr31900 transcription start site region 31900 1874 bp upstream
Tssr31901 transcription start site region 31901 1906 bp upstream
Tssr31902 transcription start site region 31902 1939 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory