rs46100676 SNP Detail

Summary

• ID
  rs46100676
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68292192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT GGTGGTGCTT ACCCATAGTC
  C
  CAACCCTTTA GATGTCCTTA ATTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147365460	ENSMUSSNP7119887	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325667195	CHEV_18_68318775	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46100676					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68292192 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr393849	regulatory region 393849	739 bp downstream
Rr540015	regulatory region 540015	1093 bp distal
Rr540016	regulatory region 540016	718 bp proximal
Tssr151775	transcription start site region 151775	1065 bp upstream