rs46102760 SNP Detail

Summary

• ID
  rs46102760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCCCTG GAAGGGATAG
  AAGGGGTAAT AGGATTAGAA GGGGAAGGAG GGCTAGATCT GAAAACCCAG GAGTTTGAAT
  TCCTAAATCC AGTGGTGGTT ATGGATCCTG GGGTTTGAGA AGGGCTGTCT AAATACATGG
  CCTCCTTGAG GAGTGCTGGA ACACACCCAC CTTCCTGCAC TGAACTAGAG ATTCCTTTAA
  R
  CCCTTCTGAG CACTGGGATT GCTGGCTGGC TCTCAATTCT GGAAGGTCCT CTTCTCTGCT
  AGCTGGTTAG TTGACTGGTT GCTTTTTAAG CCAGGGTTTC TATGTAGCCT TGCCTGACCT
  GGAACTCACT GTAAACCAGG CTAGCCTGGA ACTCAGACCC ACCTGCCTCT GCCTCCAGGG
  TGCTGGGATT GGAGCAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss60312527	NES15816125	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G		G
ss146452644	ENSMUSSNP3342622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs46102760					SNP	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312527	NES15816125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1544 bp distal
Rr363443	regulatory region 363443	550 bp proximal
Rr370520	regulatory region 370520	836 bp upstream
Trim8	tripartite motif-containing 8	756 bp downstream
Tssr156777	transcription start site region 156777	1871 bp downstream
Tssr156778	transcription start site region 156778	1449 bp downstream
Tssr156779	transcription start site region 156779	1355 bp downstream
Tssr156780	transcription start site region 156780	1032 bp downstream
Tssr156781	transcription start site region 156781	1008 bp downstream
Tssr156782	transcription start site region 156782	902 bp downstream