rs46102899 SNP Detail

Summary

• ID
  rs46102899
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAATACC ATGTAGCTGG GCATAGGGCA CACGCCTTTA
  ATCCCAGGAC TCAGGAGGCA GAGGCAGGCA GATCTCTGAG TTCAAGGCCA GCCTGGCCTA
  M
  GGTGAGTTTC AGGACAGCCA AGGCTACCCA GTGAAACCCT GTCTCCAAAT AGCACATAGG
  GCTGGCGAGA TGGCTCAACG GGTAAGGGCA CTCACTGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148471683	ENSMUSSNP6410660	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322116776	CHEV_7_19848127	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46102899					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996703 () rs orientation: forward

Symbol	Name	Function Class
Tssr70880	transcription start site region 70880	1835 bp upstream
Tssr70881	transcription start site region 70881	1771 bp upstream
Tssr70882	transcription start site region 70882	719 bp upstream
Tssr70883	transcription start site region 70883	1691 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates