rs46105066 SNP Detail

Summary

• ID
  rs46105066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52394933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATTGG AAAGAATTCA
  AGGTTAAAGC AATATTTGTA TGTATGATAC TGTATATGAA TAGAGACAAT TCAAATAACA
  TAACTAATGG TAATAAAATT TAGCCTTGTG ATACTCCAAG ACTGGCTGTA TTTGAAAGTG
  CAGTTTGAAG TATAGTCATT TGTTTTTAGA GGGAAATGTA TAGAGAATGT ACAGAGTGGT
  Y
  TGTGATTTTT TCCCTCTTTT TAGTAGTCTC ACTATTCACA GATAGGTGTA GAGCTGTTGC
  TAAGCACTGT AACTTGAAGA GGTAATGAAA GTTACCAAAC ATAAACACAT ACTGCCTTAA
  CTTTCCTGCT TAATTGTCAG CCAAACCACG TTCAAAATTT GGATGACTGG ATTCTTTTCT
  CACTCGATTA AGGTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52300047	NES15306517	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T		C
ss323303671	CHEV_10_52238643	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46105066					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52300047	NES15306517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52394933 () rs orientation: forward

Symbol	Name	Function Class
Gm47610	predicted gene, 47610	355 bp upstream
Gm65895	predicted gene, 65895	within coordinates