rs46107355 SNP Detail

Summary

• ID
  rs46107355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30907060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAATAGCTA TGTCTATTGT TTCCAAAAGG AATGATCAAA
  GGTGTTATGC CTTAAACTGT TTTTTCCCTA AAACATAGGT TACATGGTCA TTTTTTTGTG
  R
  ATGGTCTTTA CACAGTTTTC AAGTTTAAAT GAGGTCATTG GTATTGTTCA AAAAGGGGGA
  GGGGTGTTTT AGGACTTGGC AAAAGACAGA GGGAGACAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60988993	NES16133975	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46107355					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988993	NES16133975	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30907060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	560 bp proximal
Gm37292	predicted gene, 37292	722 bp upstream
Gm73020	predicted gene, 73020	679 bp upstream
Rr645057	regulatory region 645057	338 bp proximal
Rr645058	regulatory region 645058	718 bp proximal
Rr645059	regulatory region 645059	872 bp proximal
Tssr65855	transcription start site region 65855	197 bp upstream
Tssr65856	transcription start site region 65856	691 bp upstream
Tssr65857	transcription start site region 65857	735 bp upstream