rs46108386 SNP Detail

Summary

• ID
  rs46108386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTACCCT TGGCATTGGG
  TAACAGAAAC GTGCCATAGC AGGTGACCCC CGAGACCGGC TGGCAAAGCT CTGTGGTTTT
  ATTTTTCTTG AGAGGCAAGA GACAGCTTTG TCATTCAGAG GGCATATAGA AACTCGGGTC
  TGGGTAGGCA CCAACCCCCA TCCCTGATGG CAGAGAGAGG GAGAATGACA GAGTCACCAG
  S
  CTCTGATCCC CTCTGAGTGC CCCAGCCATA CTGCTATACT ACAGGATTCT GAGGATGGCT
  AGAGCCAGGG CCAGAAGGCT CACCACCCAG CCCTGTGCCC TGATCAAAGG GGCTCAGTGG
  AGCCACGAGA TAAAGAGCTT TCAGGCCCCA AATTCCATAA ACGGGGAGTG GTGGGACTCA
  CCGTGATCCC AGCATTCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279722	NES16893293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46108386					SNP	C	C	C	C	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279722	NES16893293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022070 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	331 bp proximal
Rr219987	regulatory region 219987	1331 bp proximal
Rr228220	regulatory region 228220	53 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1195 bp downstream