rs46109100 SNP Detail

Summary

• ID
  rs46109100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114126918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTCAAAGAC ACTTCTGCCA AGATTCTAAC TCACTCTGTC
  ATGATTTCCT CAGCCATGAT ACAATGTAGG TGTAGGGGTG TGTGTGTGTG TGAGAGAGGG
  S
  GGGGGGACAT TCTGGACACC TCAGACAGAC ACACCTGGGT GCTACATCCC ACTCCTTTCC
  TCTACAGAGG ACTACCTCCC CCAGTGGAAG ATATTTAATG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132855995	ENSMUSSNP6233073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46109100					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114126918 () rs orientation: forward

Symbol	Name	Function Class
Gm11690	predicted gene 11690	within coordinates
Rr248568	regulatory region 248568	518 bp distal
Rr248569	regulatory region 248569	1683 bp proximal
Tssr111662	transcription start site region 111662	1046 bp downstream
Tssr111663	transcription start site region 111663	1115 bp downstream