rs46109397 SNP Detail

Summary

• ID
  rs46109397
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118354779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTGAAGACCA CATCTAGAAA ACCCAACATG GCAGTGTTAC
  ACTGAAAACA AAACGAAGCG TTAAGTACAT GTCGAATTAA AAGAAAATGG ATAAAGTAAC
  G
  AAAAATACCA GCGAGGAGGG AATCATATGA TTCCAAAATT ATCATGATCT AGCCAATAGG
  ACGAAGTGCC CTGTGTGCCT TAAAAGAAAC AGATAGCACC A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135697707	ENSMUSSNP5911877	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46109397					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118354779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13752	CpG island 13752	902 bp proximal
Dpyd	dihydropyrimidine dehydrogenase	999 bp upstream
Rr583905	regulatory region 583905	533 bp proximal
Rr583906	regulatory region 583906	1061 bp proximal
Tssr31414	transcription start site region 31414	1015 bp upstream
Tssr31415	transcription start site region 31415	1032 bp upstream