rs46110202 SNP Detail

Summary

• ID
  rs46110202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43880004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGAGCT CCCCAGAAAC
  TGGCTCCAGA ATTGTTGCGT GGAGGGGAGG GGTTGCTTCT GAGAAAGCCA CCCTAAGAAT
  TCAGAATTGA GGGGGCGGAA GCTGAACCCA GTGCAGCAGG GAAATGTGGT GTTCTTAGAT
  CTCATCCTGG GACGTCCTTA CAAGGAATAT CCCAGATCTT CCCAGGTCTA AGAAGTTTGA
  R
  AACTGAATTA TAAAAATAAA GCAATGCTGC TCTTTCTTGG GGCATCCGGC TGCTGGCCAG
  ATGAAATGAC CTTTAAGGCT GGATTTTTAC AAAGCAAAGT AAGCTAAATA AATTAATTAA
  TTAAAATTAA AATTAAAAAA AAATAAAAAA AGAACATGGT CCTCGATTGG GGCTTCCATT
  CTATCCCATG GGAATCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62747660	NES17340464	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46110202					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747660	NES17340464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43880004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	622 bp distal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	834 bp distal
Rr527122	regulatory region 527122	48 bp distal
Tssr144685	transcription start site region 144685	1108 bp downstream
Tssr144686	transcription start site region 144686	976 bp downstream
Tssr144687	transcription start site region 144687	956 bp downstream
Tssr144688	transcription start site region 144688	810 bp downstream
Tssr144689	transcription start site region 144689	655 bp downstream
Tssr144690	transcription start site region 144690	620 bp downstream
Tssr144691	transcription start site region 144691	572 bp downstream
Tssr144692	transcription start site region 144692	521 bp downstream
Tssr144693	transcription start site region 144693	474 bp downstream
Tssr144694	transcription start site region 144694	437 bp downstream
Tssr144695	transcription start site region 144695	409 bp downstream
Tssr144696	transcription start site region 144696	370 bp downstream
Tssr144697	transcription start site region 144697	283 bp upstream
Tssr148130	transcription start site region 148130	584 bp upstream
Tssr148131	transcription start site region 148131	835 bp downstream
Tssr148132	transcription start site region 148132	858 bp downstream